OpenMS
AverageLinkage.h
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31 // $Maintainer: Mathias Walzer $
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35 #pragma once
36 
37 #include <vector>
38 #include <set>
39 
43 
44 namespace OpenMS
45 {
56  class OPENMS_DLLAPI AverageLinkage :
57  public ClusterFunctor, public ProgressLogger
58  {
59 public:
60 
63 
65  AverageLinkage(const AverageLinkage & source);
66 
68  ~AverageLinkage() override;
69 
72 
73 
84  void operator()(DistanceMatrix<float> & original_distance, std::vector<BinaryTreeNode> & cluster_tree, const float threshold = 1) const override;
85 
87  static ClusterFunctor * create();
88 
90  static const String getProductName();
91 
92  };
93 
94 }
AverageLinkage ClusterMethod.
Definition: AverageLinkage.h:58
AverageLinkage(const AverageLinkage &source)
copy constructor
AverageLinkage()
default constructor
~AverageLinkage() override
destructor
void operator()(DistanceMatrix< float > &original_distance, std::vector< BinaryTreeNode > &cluster_tree, const float threshold=1) const override
clusters the indices according to their respective element distances
static ClusterFunctor * create()
creates a new instance of a AverageLinkage object
AverageLinkage & operator=(const AverageLinkage &source)
assignment operator
static const String getProductName()
get the identifier for this object
Base class for cluster functors.
Definition: ClusterFunctor.h:54
A two-dimensional distance matrix, similar to OpenMS::Matrix.
Definition: DistanceMatrix.h:68
Base class for all classes that want to report their progress.
Definition: ProgressLogger.h:53
A more convenient string class.
Definition: String.h:60
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48