OpenMS
BaseGroupFinder.h
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Clemens Groepl, Marc Sturm $
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34 
35 #pragma once
36 
40 
41 #include <utility>
42 #include <fstream>
43 
44 namespace OpenMS
45 {
46 
61  class OPENMS_DLLAPI BaseGroupFinder :
62  public DefaultParamHandler,
63  public ProgressLogger
64  {
65 public:
68 
70  ~BaseGroupFinder() override;
71 
77  virtual void run(const std::vector<ConsensusMap> & input, ConsensusMap & result) = 0;
78 
80  static void registerChildren();
81 
82 protected:
83 
89  void checkIds_(const std::vector<ConsensusMap> & maps) const;
90 
91 private:
92 
95 
98 
99  };
100 
101 } // namespace OpenMS
102 
The base class of all element group finding algorithms.
Definition: BaseGroupFinder.h:64
BaseGroupFinder()
Default constructor.
static void registerChildren()
Register all derived classes here.
void checkIds_(const std::vector< ConsensusMap > &maps) const
Checks if all file descriptions have disjoint map identifiers.
BaseGroupFinder(const BaseGroupFinder &)
Copy constructor intentionally not implemented.
virtual void run(const std::vector< ConsensusMap > &input, ConsensusMap &result)=0
Run the algorithm.
~BaseGroupFinder() override
Destructor.
BaseGroupFinder & operator=(const BaseGroupFinder &)
Assignment operator intentionally not implemented.
A container for consensus elements.
Definition: ConsensusMap.h:92
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:92
Base class for all classes that want to report their progress.
Definition: ProgressLogger.h:53
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48