OpenMS
DigestionEnzymeRNA.h
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31 // $Maintainer: Hendrik Weisser $
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35 
36 #pragma once
37 
39 
40 namespace OpenMS
41 {
57  class OPENMS_DLLAPI DigestionEnzymeRNA: public DigestionEnzyme
58  {
59  public:
61  void setCutsAfterRegEx(const String& value);
62 
65 
67  void setCutsBeforeRegEx(const String& value);
68 
71 
73  void setThreePrimeGain(const String& value);
74 
77 
79  void setFivePrimeGain(const String& value);
80 
83 
89  bool setValueFromFile(const String& key, const String& value) override;
90 
91  protected:
96  };
97 
99 }
100 
Representation of a digestion enzyme for RNA (RNase)
Definition: DigestionEnzymeRNA.h:58
void setCutsBeforeRegEx(const String &value)
sets the "cuts before ..." regular expression
bool setValueFromFile(const String &key, const String &value) override
Set the value of a member variable based on an entry from an input file.
String three_prime_gain_
Definition: DigestionEnzymeRNA.h:92
String getFivePrimeGain() const
returns the 5' gain (as a nucleotide modification code)
void setCutsAfterRegEx(const String &value)
sets the "cuts after ..." regular expression
String cuts_after_regex_
Definition: DigestionEnzymeRNA.h:94
void setThreePrimeGain(const String &value)
sets the 3' gain (as a nucleotide modification code)
String getCutsAfterRegEx() const
returns the "cuts after ..." regular expression
String getThreePrimeGain() const
returns the 3' gain (as a nucleotide modification code)
String cuts_before_regex_
Definition: DigestionEnzymeRNA.h:95
String five_prime_gain_
Definition: DigestionEnzymeRNA.h:93
String getCutsBeforeRegEx() const
returns the "cuts before ..." regular expression
void setFivePrimeGain(const String &value)
sets the 5' gain (as a nucleotide modification code)
Base class for digestion enzymes.
Definition: DigestionEnzyme.h:53
A more convenient string class.
Definition: String.h:60
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48
DigestionEnzymeRNA RNase
Definition: DigestionEnzymeRNA.h:98