OpenMS
MRMFragmentSelection.h
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Andreas Bertsch $
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34 
35 #pragma once
36 
39 
40 #include <vector>
41 
42 namespace OpenMS
43 {
58  class OPENMS_DLLAPI MRMFragmentSelection :
59  public DefaultParamHandler
60  {
61 
62 public:
63 
69 
72 
76 
79 
81  void selectFragments(std::vector<Peak1D> & selected_peaks, const PeakSpectrum & spec);
82 
83 protected:
84 
86  bool peakselectionIsAllowed_(const String& name, const int charge);
87  };
88 }
89 
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:92
This class can select appropriate fragment ions of an MS/MS spectrum of a peptide.
Definition: MRMFragmentSelection.h:60
MRMFragmentSelection(const MRMFragmentSelection &rhs)
copy constructor
~MRMFragmentSelection() override
destructor
void selectFragments(std::vector< Peak1D > &selected_peaks, const PeakSpectrum &spec)
selects accordingly to the parameters the best peaks of spec and writes them into selected_peaks
MRMFragmentSelection & operator=(const MRMFragmentSelection &rhs)
assignment operator
bool peakselectionIsAllowed_(const String &name, const int charge)
returns true if the selection of peak is allowed, according to the parameters set and the ion name
MRMFragmentSelection()
default constructor
The representation of a 1D spectrum.
Definition: MSSpectrum.h:70
A more convenient string class.
Definition: String.h:60
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48