OpenMS
MRMMapping.h
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31 // $Maintainer: Hannes Roest $
32 // $Authors: Hannes Roest $
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34 
35 #pragma once
36 
38 
41 
42 namespace OpenMS
43 {
44 
49  class OPENMS_DLLAPI MRMMapping :
50  public DefaultParamHandler
51  {
52 public:
53 
59 
61  ~MRMMapping() override {}
63 
85  void mapExperiment(const OpenMS::PeakMap& input_chromatograms,
86  const OpenMS::TargetedExperiment& targeted_exp,
87  OpenMS::PeakMap& output) const;
88 
89 protected:
90 
92  MRMMapping(const MRMMapping & rhs);
93 
96 
98  void updateMembers_() override;
99 
101  double product_tol_;
104 
105  };
106 }
107 
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:92
A class to map targeted assays to chromatograms.
Definition: MRMMapping.h:51
void mapExperiment(const OpenMS::PeakMap &input_chromatograms, const OpenMS::TargetedExperiment &targeted_exp, OpenMS::PeakMap &output) const
Maps input chromatograms to assays in a targeted experiment.
MRMMapping & operator=(const MRMMapping &rhs)
assignment operator
MRMMapping()
default constructor
double precursor_tol_
Definition: MRMMapping.h:100
double product_tol_
Definition: MRMMapping.h:101
~MRMMapping() override
destructor
Definition: MRMMapping.h:61
bool map_multiple_assays_
Definition: MRMMapping.h:102
void updateMembers_() override
Synchronize members with param class.
bool error_on_unmapped_
Definition: MRMMapping.h:103
MRMMapping(const MRMMapping &rhs)
copy constructor
In-Memory representation of a mass spectrometry run.
Definition: MSExperiment.h:72
A description of a targeted experiment containing precursor and production ions.
Definition: TargetedExperiment.h:65
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48