OpenMS
MapUtilities.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2023.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Julianus Pfeuffer$
32 // $Authors: Julianus Pfeuffer $
33 // --------------------------------------------------------------------------
34 
35 #pragma once
36 
37 #include <OpenMS/config.h>
39 #include <vector>
40 
41 namespace OpenMS
42 {
48  template <class MapType>
50  {
51  public:
53  template <class T>
54  void applyFunctionOnPeptideHits(T&& f, bool include_unassigned = true)
55  {
56  for (auto& feat : static_cast<MapType&>(*this))
57  {
58  applyFunctionOnPeptideHits_(feat.getPeptideIdentifications(), f);
59  }
60  if (include_unassigned)
61  {
62  applyFunctionOnPeptideHits_(static_cast<MapType&>(*this).getUnassignedPeptideIdentifications(), f);
63  }
64  }
65 
67  template <class T>
68  void applyFunctionOnPeptideIDs(T&& f, bool include_unassigned = true)
69  {
70  for (auto& feat : static_cast<MapType&>(*this))
71  {
72  applyFunctionOnPeptideIDs_(feat.getPeptideIdentifications(), f);
73  }
74  if (include_unassigned)
75  {
76  applyFunctionOnPeptideIDs_(static_cast<MapType&>(*this).getUnassignedPeptideIdentifications(), f);
77  }
78  }
79 
81  template <class T>
82  void applyFunctionOnPeptideHits(T&& f, bool include_unassigned = true) const
83  {
84  for (const auto& feat : static_cast<MapType const&>(*this))
85  {
86  applyFunctionOnPeptideHits_(feat.getPeptideIdentifications(), f);
87  }
88  if (include_unassigned)
89  {
90  applyFunctionOnPeptideHits_(static_cast<MapType const&>(*this).getUnassignedPeptideIdentifications(), f);
91  }
92  }
93 
95  template <class T>
96  void applyFunctionOnPeptideIDs(T&& f, bool include_unassigned = true) const
97  {
98  for (const auto& feat : static_cast<MapType const&>(*this))
99  {
100  applyFunctionOnPeptideIDs_(feat.getPeptideIdentifications(), f);
101  }
102  if (include_unassigned)
103  {
104  applyFunctionOnPeptideIDs_(static_cast<MapType const&>(*this).getUnassignedPeptideIdentifications(), f);
105  }
106  }
107 
108  private:
109  template <class T>
110  void applyFunctionOnPeptideIDs_(std::vector<PeptideIdentification>& idvec, T&& f)
111  {
112  for (auto& id : idvec)
113  {
114  f(id);
115  }
116  }
117 
118  template <class T>
119  void applyFunctionOnPeptideHits_(std::vector<PeptideIdentification>& idvec, T&& f)
120  {
121  for (auto& id : idvec)
122  {
123  for (auto& hit : id.getHits())
124  {
125  f(hit);
126  }
127  }
128  }
129 
130  template <class T>
131  void applyFunctionOnPeptideIDs_(const std::vector<PeptideIdentification>& idvec, T&& f) const
132  {
133  for (const auto& id : idvec)
134  {
135  f(id);
136  }
137  }
138 
139  template <class T>
140  void applyFunctionOnPeptideHits_(const std::vector<PeptideIdentification>& idvec, T&& f) const
141  {
142  for (const auto& id : idvec)
143  {
144  for (const auto& hit : id.getHits())
145  {
146  f(hit);
147  }
148  }
149  }
150  };
151 
152 } // namespace OpenMS
153 
In-Memory representation of a mass spectrometry run.
Definition: MSExperiment.h:72
Utilities for Feature and ConsensusMap.
Definition: MapUtilities.h:50
void applyFunctionOnPeptideIDs(T &&f, bool include_unassigned=true) const
applies a const function on all PeptideIDs or only assigned ones
Definition: MapUtilities.h:96
void applyFunctionOnPeptideHits_(const std::vector< PeptideIdentification > &idvec, T &&f) const
Definition: MapUtilities.h:140
void applyFunctionOnPeptideIDs_(const std::vector< PeptideIdentification > &idvec, T &&f) const
Definition: MapUtilities.h:131
void applyFunctionOnPeptideHits(T &&f, bool include_unassigned=true)
applies a function on all PeptideHits or only assigned ones
Definition: MapUtilities.h:54
void applyFunctionOnPeptideIDs(T &&f, bool include_unassigned=true)
applies a function on all PeptideIDs or only assigned ones
Definition: MapUtilities.h:68
void applyFunctionOnPeptideIDs_(std::vector< PeptideIdentification > &idvec, T &&f)
Definition: MapUtilities.h:110
void applyFunctionOnPeptideHits_(std::vector< PeptideIdentification > &idvec, T &&f)
Definition: MapUtilities.h:119
void applyFunctionOnPeptideHits(T &&f, bool include_unassigned=true) const
applies a const function on all PeptideHits or only assigned ones
Definition: MapUtilities.h:82
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48