OpenMS
MzDataFile.h
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Marc Sturm $
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34 
35 #pragma once
36 
37 #include <OpenMS/FORMAT/XMLFile.h>
41 #include <OpenMS/KERNEL/Peak1D.h>
45 
46 namespace OpenMS
47 {
53  class OPENMS_DLLAPI MzDataFile :
54  public Internal::XMLFile,
55  public ProgressLogger
56  {
57  typedef PeakMap MapType;
58 
59 public:
60 
64  ~MzDataFile() override;
65 
68 
70  const PeakFileOptions & getOptions() const;
71 
73  void setOptions(const PeakFileOptions &);
74 
83  void load(const String & filename, MapType & map);
84 
92  void store(const String & filename, const MapType & map) const;
93 
103  bool isSemanticallyValid(const String & filename, StringList & errors, StringList & warnings);
104 
105 private:
106 
109  };
110 
111 } // namespace OpenMS
112 
113 
Base class for loading/storing XML files that have a handler derived from XMLHandler.
Definition: XMLFile.h:49
In-Memory representation of a mass spectrometry run.
Definition: MSExperiment.h:72
File adapter for MzData files.
Definition: MzDataFile.h:56
void setOptions(const PeakFileOptions &)
set options for loading/storing
MzDataFile()
Default constructor.
const PeakFileOptions & getOptions() const
Non-mutable access to the options for loading/storing.
PeakFileOptions options_
Options for loading / storing.
Definition: MzDataFile.h:108
~MzDataFile() override
Destructor.
void load(const String &filename, MapType &map)
Loads a map from a MzData file.
PeakFileOptions & getOptions()
Mutable access to the options for loading/storing.
PeakMap MapType
Definition: MzDataFile.h:57
void store(const String &filename, const MapType &map) const
Stores a map in a MzData file.
bool isSemanticallyValid(const String &filename, StringList &errors, StringList &warnings)
Checks if a file is valid with respect to the mapping file and the controlled vocabulary.
Options for loading files containing peak data.
Definition: PeakFileOptions.h:48
Base class for all classes that want to report their progress.
Definition: ProgressLogger.h:53
A more convenient string class.
Definition: String.h:60
std::vector< String > StringList
Vector of String.
Definition: ListUtils.h:70
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48