OpenMS
MzDataValidator.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2023.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Marc Sturm $
33 // --------------------------------------------------------------------------
34 
35 #pragma once
36 
38 
39 namespace OpenMS
40 {
41  class ControlledVocabulary;
42  namespace Internal
43  {
44 
48  class OPENMS_DLLAPI MzDataValidator :
49  public SemanticValidator
50  {
51 public:
58  MzDataValidator(const CVMappings & mapping, const ControlledVocabulary & cv);
59 
61  ~MzDataValidator() override;
62 
63 protected:
64 
65  //Docu in base class
66  void handleTerm_(const String & path, const CVTerm & parsed_term) override;
67 
68 private:
69 
72 
75 
78 
79  };
80 
81  } // namespace Internal
82 
83 } // namespace OpenMS
84 
Representation of controlled vocabulary mapping rules (for PSI formats)
Definition: CVMappings.h:57
Representation of a controlled vocabulary.
Definition: ControlledVocabulary.h:55
Semantically validates MzXML files.
Definition: MzDataValidator.h:50
MzDataValidator(const MzDataValidator &rhs)
Not implemented.
void handleTerm_(const String &path, const CVTerm &parsed_term) override
Handling of the term.
MzDataValidator & operator=(const MzDataValidator &rhs)
Not implemented.
~MzDataValidator() override
Destructor.
MzDataValidator(const CVMappings &mapping, const ControlledVocabulary &cv)
Constructor.
Semantically validates XML files using CVMappings and a ControlledVocabulary.
Definition: SemanticValidator.h:58
Representation of a parsed CV term.
Definition: SemanticValidator.h:73
A more convenient string class.
Definition: String.h:60
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48