OpenMS
MzMLValidator.h
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Marc Sturm $
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34 
35 #pragma once
36 
38 #include <map>
39 
40 namespace OpenMS
41 {
42  class ControlledVocabulary;
43  namespace Internal
44  {
45 
49  class OPENMS_DLLAPI MzMLValidator :
50  public SemanticValidator
51  {
52 public:
59  MzMLValidator(const CVMappings & mapping, const ControlledVocabulary & cv);
60 
62  ~MzMLValidator() override;
63 
64 protected:
65 
66  // Docu in base class
67  void startElement(const XMLCh * const /*uri*/, const XMLCh * const /*local_name*/, const XMLCh * const qname, const xercesc::Attributes & attributes) override;
68 
69  // Docu in base class
70  String getPath_(UInt remove_from_end = 0) const override;
71 
72  // Docu in base class
73  void handleTerm_(const String & path, const CVTerm & parsed_term) override;
74 
76  std::map<String, std::vector<CVTerm> > param_groups_;
77 
80 
85 
86 private:
87 
90 
93 
96 
97  };
98 
99  } // namespace Internal
100 
101 } // namespace OpenMS
102 
Representation of controlled vocabulary mapping rules (for PSI formats)
Definition: CVMappings.h:57
Representation of a controlled vocabulary.
Definition: ControlledVocabulary.h:55
Semantically validates MzXML files.
Definition: MzMLValidator.h:51
std::map< String, std::vector< CVTerm > > param_groups_
CV terms which can have a value (term => value type)
Definition: MzMLValidator.h:76
~MzMLValidator() override
Destructor.
String getPath_(UInt remove_from_end=0) const override
Returns the current element path.
MzMLValidator & operator=(const MzMLValidator &rhs)
Not implemented.
void handleTerm_(const String &path, const CVTerm &parsed_term) override
Handling of the term.
MzMLValidator()
Not implemented.
MzMLValidator(const MzMLValidator &rhs)
Not implemented.
String current_id_
Current referenceableParamGroup identifier.
Definition: MzMLValidator.h:79
MzMLValidator(const CVMappings &mapping, const ControlledVocabulary &cv)
Constructor.
void startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) override
String binary_data_array_
Binary data array name.
Definition: MzMLValidator.h:82
String binary_data_type_
Binary data array type.
Definition: MzMLValidator.h:84
Semantically validates XML files using CVMappings and a ControlledVocabulary.
Definition: SemanticValidator.h:58
Representation of a parsed CV term.
Definition: SemanticValidator.h:73
A more convenient string class.
Definition: String.h:60
unsigned int UInt
Unsigned integer type.
Definition: Types.h:94
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48