OpenMS
MzQuantMLFile.h
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31 // $Maintainer: Mathias Walzer $
32 // $Authors: Mathias Walzer $
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34 
35 #pragma once
36 
37 #include <OpenMS/FORMAT/XMLFile.h>
41 
42 namespace OpenMS
43 {
51  class OPENMS_DLLAPI MzQuantMLFile :
52  public Internal::XMLFile,
53  public ProgressLogger
54  {
55 public:
59  ~MzQuantMLFile() override;
60 
67  void load(const String & filename, MSQuantifications & msq);
68 
74  void store(const String & filename, const MSQuantifications & cmsq) const;
75 
76  //~ this is not overwritten, XMLFile version works fine
77  //~ bool isValid(const String& filename, std::ostream& os = std::cerr);
78 
88  bool isSemanticallyValid(const String & filename, StringList & errors, StringList & warnings);
89 
90 private:
91 
92  };
93 
94 } // namespace OpenMS
95 
Base class for loading/storing XML files that have a handler derived from XMLHandler.
Definition: XMLFile.h:49
Definition: MSQuantifications.h:53
File adapter for MzQuantML files.
Definition: MzQuantMLFile.h:54
MzQuantMLFile()
Default constructor.
void load(const String &filename, MSQuantifications &msq)
Loads a map from a MzQuantML file.
~MzQuantMLFile() override
Destructor.
void store(const String &filename, const MSQuantifications &cmsq) const
Stores a map in a MzQuantML file.
bool isSemanticallyValid(const String &filename, StringList &errors, StringList &warnings)
Checks if a file is valid with respect to the mapping file and the controlled vocabulary.
Base class for all classes that want to report their progress.
Definition: ProgressLogger.h:53
A more convenient string class.
Definition: String.h:60
std::vector< String > StringList
Vector of String.
Definition: ListUtils.h:70
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48