OpenMS
SingleLinkage.h
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31 // $Maintainer: Mathias Walzer $
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35 #pragma once
36 
37 #include <vector>
38 #include <set>
39 
43 
44 namespace OpenMS
45 {
55  class OPENMS_DLLAPI SingleLinkage :
56  public ClusterFunctor, public ProgressLogger
57  {
58 public:
59 
62 
64  SingleLinkage(const SingleLinkage & source);
65 
67  ~SingleLinkage() override;
68 
71 
82  void operator()(DistanceMatrix<float> & original_distance, std::vector<BinaryTreeNode> & cluster_tree, const float threshold = 1) const override;
83 
85  static ClusterFunctor * create();
86 
88  static const String getProductName();
89  };
90 
91 
92 
93 }
Base class for cluster functors.
Definition: ClusterFunctor.h:54
A two-dimensional distance matrix, similar to OpenMS::Matrix.
Definition: DistanceMatrix.h:68
Base class for all classes that want to report their progress.
Definition: ProgressLogger.h:53
SingleLinkage ClusterMethod.
Definition: SingleLinkage.h:57
SingleLinkage & operator=(const SingleLinkage &source)
assignment operator
SingleLinkage(const SingleLinkage &source)
copy constructor
SingleLinkage()
default constructor
void operator()(DistanceMatrix< float > &original_distance, std::vector< BinaryTreeNode > &cluster_tree, const float threshold=1) const override
clusters the indices according to their respective element distances
static ClusterFunctor * create()
creates a new instance of a SingleLinkage object
~SingleLinkage() override
destructor
static const String getProductName()
get the identifier for this object
A more convenient string class.
Definition: String.h:60
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48