OpenMS
SpectrumAccessTransforming.h
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31 // $Maintainer: Hannes Roest $
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34 
35 #pragma once
36 
37 #include <OpenMS/config.h>
39 
40 namespace OpenMS
41 {
42 
47  class OPENMS_DLLAPI SpectrumAccessTransforming :
49  {
50 public:
51 
53 
55 
56  boost::shared_ptr<ISpectrumAccess> lightClone() const override = 0;
57 
59 
61 
62  std::vector<std::size_t> getSpectraByRT(double RT, double deltaRT) const override;
63 
64  size_t getNrSpectra() const override;
65 
67 
68  size_t getNrChromatograms() const override;
69 
70  std::string getChromatogramNativeID(int id) const override;
71 
72 protected:
74 
75  };
76 
77 }
78 
79 
An abstract base class implementing a transforming wrapper around spectrum access.
Definition: SpectrumAccessTransforming.h:49
size_t getNrSpectra() const override
Returns the number of spectra available.
std::vector< std::size_t > getSpectraByRT(double RT, double deltaRT) const override
Return a vector of ids of spectra that are within RT +/- deltaRT.
size_t getNrChromatograms() const override
Returns the number of chromatograms available.
OpenSwath::ChromatogramPtr getChromatogramById(int id) override
Return a pointer to a chromatogram at the given id.
OpenSwath::SpectrumPtr getSpectrumById(int id) override
Return a pointer to a spectrum at the given id.
std::string getChromatogramNativeID(int id) const override
Returns the native id of the chromatogram at the given id.
SpectrumAccessTransforming(OpenSwath::SpectrumAccessPtr sptr)
boost::shared_ptr< ISpectrumAccess > lightClone() const override=0
Light clone operator to produce a copy for concurrent read access.
OpenSwath::SpectrumMeta getSpectrumMetaById(int id) const override
Returns the meta information for a spectrum.
OpenSwath::SpectrumAccessPtr sptr_
Definition: SpectrumAccessTransforming.h:73
The interface of a mass spectrometry experiment.
Definition: openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:51
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48
boost::shared_ptr< Chromatogram > ChromatogramPtr
Definition: openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:172
boost::shared_ptr< Spectrum > SpectrumPtr
Definition: openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:296
boost::shared_ptr< ISpectrumAccess > SpectrumAccessPtr
Definition: openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:87
Identifying information for a spectrum.
Definition: openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:176