• H. L. Röst, G. Rosenberger, P. Navarro, L. Gillet, S. M. Miladinović, O. T. Schubert, W. Wolski, B. C. Collins, J. Malmström, L. Malmström, and others, “OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data,” Nature biotechnology, vol. 32, iss. 3, pp. 219-223, 2014.
    [Bibtex]
    @article{rost2014openswath,
    title={OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data},
    author={R{\"o}st, Hannes L and Rosenberger, George and Navarro, Pedro and Gillet, Ludovic and Miladinovi{\'c}, Sa{\v{s}}a M and Schubert, Olga T and Wolski, Witold and Collins, Ben C and Malmstr{\"o}m, Johan and Malmstr{\"o}m, Lars and others},
    journal={Nature biotechnology},
    volume={32},
    number={3},
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    year={2014},
    publisher={Nature Publishing Group}
    }
  • H. L. Röst, U. Schmitt, R. Aebersold, and L. Malmström, “pyOpenMS: A Python-based interface to the OpenMS mass-spectrometry algorithm library,” Proteomics, vol. 14, iss. 1, pp. 74-77, 2014.
    [Bibtex]
    @article{rost2014pyopenms,
    title={pyOpenMS: A Python-based interface to the OpenMS mass-spectrometry algorithm library},
    author={R{\"o}st, Hannes L and Schmitt, Uwe and Aebersold, Ruedi and Malmstr{\"o}m, Lars},
    journal={Proteomics},
    volume={14},
    number={1},
    pages={74--77},
    year={2014},
    publisher={Wiley Online Library}
    }
  • E. Kenar, H. Franken, S. Forcisi, K. Wörmann, H. Häring, R. Lehmann, P. Schmitt-Kopplin, A. Zell, and O. Kohlbacher, “Automated Label-free Quantification of Metabolites from Liquid Chromatography–Mass Spectrometry Data,” Molecular & Cellular Proteomics, vol. 13, iss. 1, pp. 348-359, 2014.
    [Bibtex]
    @article{kenar2014automated,
    title={Automated Label-free Quantification of Metabolites from Liquid Chromatography--Mass Spectrometry Data},
    author={Kenar, Erhan and Franken, Holger and Forcisi, Sara and W{\"o}rmann, Kilian and H{\"a}ring, Hans-Ulrich and Lehmann, Rainer and Schmitt-Kopplin, Philippe and Zell, Andreas and Kohlbacher, Oliver},
    journal={Molecular \& Cellular Proteomics},
    volume={13},
    number={1},
    pages={348--359},
    year={2014},
    publisher={ASBMB}
    }
  • T. Sachsenberg, F. Herbst, M. Taubert, R. Kermer, N. Jehmlich, M. von Bergen, J. Seifert, and O. Kohlbacher, “MetaProSIP: automated inference of stable isotope incorporation rates in proteins for functional metaproteomics,” Journal of proteome research, vol. 14, iss. 2, pp. 619-627, 2014.
    [Bibtex]
    @article{sachsenberg2014metaprosip,
    title={MetaProSIP: automated inference of stable isotope incorporation rates in proteins for functional metaproteomics},
    author={Sachsenberg, Timo and Herbst, Florian-Alexander and Taubert, Martin and Kermer, Ren{\'e} and Jehmlich, Nico and von Bergen, Martin and Seifert, Jana and Kohlbacher, Oliver},
    journal={Journal of proteome research},
    volume={14},
    number={2},
    pages={619--627},
    year={2014},
    publisher={American Chemical Society}
    }
  • K. Kramer, T. Sachsenberg, B. M. Beckmann, S. Qamar, K. Boon, M. W. Hentze, O. Kohlbacher, and H. Urlaub, “Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins,” Nature methods, vol. 11, iss. 10, pp. 1064-1070, 2014.
    [Bibtex]
    @article{kramer2014photo,
    title={Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins},
    author={Kramer, Katharina and Sachsenberg, Timo and Beckmann, Benedikt M and Qamar, Saadia and Boon, Kum-Loong and Hentze, Matthias W and Kohlbacher, Oliver and Urlaub, Henning},
    journal={Nature methods},
    volume={11},
    number={10},
    pages={1064--1070},
    year={2014},
    publisher={Nature Publishing Group}
    }
  • J. Griss, A. R. Jones, T. Sachsenberg, M. Walzer, L. Gatto, J. Hartler, G. G. Thallinger, R. M. Salek, C. Steinbeck, N. Neuhauser, and others, “The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience,” Molecular & Cellular Proteomics, vol. 13, iss. 10, pp. 2765-2775, 2014.
    [Bibtex]
    @article{griss2014mztab,
    title={The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience},
    author={Griss, Johannes and Jones, Andrew R and Sachsenberg, Timo and Walzer, Mathias and Gatto, Laurent and Hartler, J{\"u}rgen and Thallinger, Gerhard G and Salek, Reza M and Steinbeck, Christoph and Neuhauser, Nadin and others},
    journal={Molecular \& Cellular Proteomics},
    volume={13},
    number={10},
    pages={2765--2775},
    year={2014},
    publisher={ASBMB}
    }
  • M. Walzer, L. E. Pernas, S. Nasso, W. Bittremieux, S. Nahnsen, P. Kelchtermans, P. Pichler, H. W. van den Toorn, A. Staes, J. Vandenbussche, and others, “qcML: an exchange format for quality control metrics from mass spectrometry experiments,” Molecular & Cellular Proteomics, vol. 13, iss. 8, pp. 1905-1913, 2014.
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    @article{walzer2014qcml,
    title={qcML: an exchange format for quality control metrics from mass spectrometry experiments},
    author={Walzer, Mathias and Pernas, Lucia Espona and Nasso, Sara and Bittremieux, Wout and Nahnsen, Sven and Kelchtermans, Pieter and Pichler, Peter and van den Toorn, Henk WP and Staes, An and Vandenbussche, Jonathan and others},
    journal={Molecular \& Cellular Proteomics},
    volume={13},
    number={8},
    pages={1905--1913},
    year={2014},
    publisher={American Society for Biochemistry and Molecular Biology}
    }