• J. A. Vizcaíno, G. Mayer, S. R. Perkins, H. Barsnes, M. Vaudel, Y. Perez-Riverol, T. Ternent, J. Uszkoreit, M. Eisenacher, L. Fischer, and others, “The mzIdentML data standard version 1.2, supporting advances in proteome informatics,” Molecular & Cellular Proteomics, p. mcp–M117, 2017.
    [Bibtex]
    @article{vizcaino2017mzidentml,
    title={The mzIdentML data standard version 1.2, supporting advances in proteome informatics},
    author={Vizca{\'i}no, Juan Antonio and Mayer, Gerhard and Perkins, Simon R and Barsnes, Harald and Vaudel, Marc and Perez-Riverol, Yasset and Ternent, Tobias and Uszkoreit, Julian and Eisenacher, Martin and Fischer, Lutz and others},
    journal={Molecular \& Cellular Proteomics},
    pages={mcp--M117},
    year={2017},
    publisher={ASBMB}
    }
  • E. Audain, J. Uszkoreit, T. Sachsenberg, J. Pfeuffer, X. Liang, H. Hermjakob, A. Sanchez, M. Eisenacher, K. Reinert, D. L. Tabb, and others, “In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics,” Journal of proteomics, vol. 150, pp. 170-182, 2017.
    [Bibtex]
    @article{audain2017depth,
    title={In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics},
    author={Audain, Enrique and Uszkoreit, Julian and Sachsenberg, Timo and Pfeuffer, Julianus and Liang, Xiao and Hermjakob, Henning and Sanchez, Aniel and Eisenacher, Martin and Reinert, Knut and Tabb, David L and others},
    journal={Journal of proteomics},
    volume={150},
    pages={170--182},
    year={2017},
    publisher={Elsevier}
    }
  • H. L. Röst, R. Aebersold, and O. T. Schubert, “Automated SWATH data analysis using targeted extraction of ion chromatograms,” Proteomics: Methods and Protocols, pp. 289-307, 2017.
    [Bibtex]
    @article{rost2017automated,
    title={Automated SWATH data analysis using targeted extraction of ion chromatograms},
    author={R{\"o}st, Hannes L and Aebersold, Ruedi and Schubert, Olga T},
    journal={Proteomics: Methods and Protocols},
    pages={289--307},
    year={2017},
    publisher={Springer New York}
    }
  • F. da Veiga Leprevost, B. A. Grüning, S. Alves Aflitos, H. L. Röst, J. Uszkoreit, H. Barsnes, M. Vaudel, P. Moreno, L. Gatto, J. Weber, and others, “BioContainers: an open-source and community-driven framework for software standardization,” Bioinformatics, p. btx192, 2017.
    [Bibtex]
    @article{da2017biocontainers,
    title={BioContainers: an open-source and community-driven framework for software standardization},
    author={da Veiga Leprevost, Felipe and Gr{\"u}ning, Bj{\"o}rn A and Alves Aflitos, Saulo and R{\"o}st, Hannes L and Uszkoreit, Julian and Barsnes, Harald and Vaudel, Marc and Moreno, Pablo and Gatto, Laurent and Weber, Jonas and others},
    journal={Bioinformatics},
    pages={btx192},
    year={2017},
    publisher={Oxford University Press}
    }
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    [Bibtex]
    @article{weisser2017targeted,
    title={Targeted feature detection for data-dependent shotgun proteomics},
    author={Weisser, Hendrik and Choudhary, Jyoti S},
    journal={Journal of Proteome Research},
    year={2017},
    publisher={ACS Publications},
    doi={10.1021/acs.jproteome.7b00248}
    }
  • [DOI] J. Pfeuffer, T. Sachsenberg, O. Alka, M. Walzer, A. Fillbrunn, L. Nilse, O. Schilling, K. Reinert, and O. Kohlbacher, “OpenMS – A platform for reproducible analysis of mass spectrometry data,” Journal of Biotechnology, 2017.
    [Bibtex]
    @article{pfeuffer2017denbi,
    title = "OpenMS – A platform for reproducible analysis of mass spectrometry data",
    journal = "Journal of Biotechnology",
    volume = "",
    number = "",
    pages = "",
    year = "2017",
    note = "",
    issn = "0168-1656",
    doi = "10.1016/j.jbiotec.2017.05.016",
    url = "http://www.sciencedirect.com/science/article/pii/S0168165617302511",
    author = "Julianus Pfeuffer and Timo Sachsenberg and Oliver Alka and Mathias Walzer and Alexander Fillbrunn and Lars Nilse and Oliver Schilling and Knut Reinert and Oliver Kohlbacher"
    }