As part of the deNBI Center for integrative Bioinformatics, OpenMS offers an open-source software C++ library (+ python bindings) for LC/MS data management and analyses. It provides an infrastructure for the rapid development of mass spectrometry related software as well as a rich toolset built on top of it. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS and Linux.

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Recent News

OpenMS + DigitalOcean Hacktoberfest 2020 on GitHub


Dear developers, it’s this time of the year again. Helping out open-source software gets even more rewarding. Sign up online with your GitHub profile Clone OpenMS git clone https://github.com/OpenMS/OpenMS Build OpenMS Do 4 pull requests and get them accepted during October. See a list of easy issues to tackle here. Get a free T-shirt and earn our …

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OpenMS Team

@Smith_Chem_Wisc @SpecInformatics If you want to look into details of one of those workflows check out github.com/nf-core/proteo… . Searching raw files in parallel, do inference on all IDs (EPIFANY) and perform quantification and downstream analysis worked well. Not implemented here yet: PTXQC

How to cite OpenMS

Röst, H.L., Sachsenberg, T., Aiche, S., Bielow, C., Weisser, H., Aicheler, F., Andreotti, S., Ehrlich, H.-C., Gutenbrunner, P., Kenar, E., Liang, X., Nahnsen, S., Nilse, L., Pfeuffer, J., Rosenberger, G., Rurik, M., Schmitt, U., Veit, J., Walzer, M., Wojnar, D., Wolski, W.E., Schilling, O., Choudhary, J.S., Malmström, L., Aebersold, R., Reinert, K., Kohlbacher, O.

OpenMS: A flexible open-source software platform for mass spectrometry data analysis. Nature Methods, vol. 13, 2016. doi:10.1038/nmeth.3959