Dear friends and colleagues, we are happy to announce the 2nd CIBI User Meeting on 19. September (09:00) until 21. September 2018 (16:00) at Freie Universität Berlin, Steintor-Campus, Arnimallee 6, 14195 Berlin, Germany OpenMS, MetFrag, FIJI, and SeqAn are developed by members of the Center for Integrative Bioinformatics (CIBI) and partially funded as a project of the [...]
We are proud to announce release 2.3.0 of OpenMS. Get it now!
OpenMS 2.2 is a source-only release. It introduces a considerable number of new features and bug fixes. We recommend checking out the Release2.2.0 git tag (https://github.com/OpenMS/OpenMS/releases/tag/Release2.2.0). Alternatively, you can download the full source code at https://sourceforge.net/projects/open-ms/files/OpenMS/OpenMS-2.2. Notable changes since version 2.1 are: Databases: By default, decoy sequences are now denoted by the prefix "DECOY_" New tools: FeatureLinkerUnlabeledKD -- Fast [...]
Joint CIBI user meeting featuring: OpenMS + MetFrag: High-performance software for high-throughput proteomics and metabolomics and SeqAn: C++ library of efficient algorithms and data structures for the analysis of biological sequence data. Dear friends and colleagues, we are happy to announce the 10th CIBI User Meeting on 25. September (09:00) until 27. September 2017 (16:00) at Martin-Luther University, Steintor-Campus, Room SR7, Emil-Abderhalden-Straße, 06108 Halle, Germany Note: OpenMS, MetFrag, and SeqAn are developed by the Center for Integrative Bioinformatics (CIBI) and funded as a project of the german network for bioinformatic infrastructure (de.NBI). Thus, for the first time, the OpenMS user meeting is part of a larger CIBI user meeting. Participants may select if they want to participate in the OpenMS or SeqAn track. We also offer a dedicated track for users that want to develop computational tools with OpenMS and SeqAn as well as an introduction to MetFrag. During the meeting, we will present the capabilities of CIBI tools OpenMS, MetFrag and SeqAn, and discuss your needs and future directions in mass spectrometry and sequence analysis. This year’s meeting will include an optional OpenMS tutorial session on the first day (Monday, September 25) with the general conference starting on Tuesday, September 26. Traditionally, the schedule of our meetings is very flexible, allowing discussions and contributions from the participants. […]
We are proud to announce the next OpenMS release (version 2.1) with many internal changes, additions, and bug fixes. Binary packages are available for Windows (64-bit) and Mac OS X dmg (64-bit). Download: OpenMS binary release 2.1.0 The online documentation contains the installation instructions. Notable changes since version 2.0.1 are: New tools: ExternalCalibration -- Applies [...]
Our new Nature Methods perspective introduces version 2.0 of the OpenMS framework for mass spectrometry data analysis. High-resolution mass spectrometry (MS) has become an important tool in the life sciences, contributing to the diagnosis and understanding of human diseases, elucidating biomolecular structural information and characterizing cellular signaling networks. However, the rapid growth in the volume [...]
OpenMS High-performance software for high-throughput proteomics and metabolomics Dear friends and colleagues, we are happy to announce the 9th OpenMS User Meeting on September 21st – 23rd, 2016 at the University of Tübingen, Germany (wikipedia.org, Felix König) During the meeting, we will present the capabilities of OpenMS, and discuss your needs and future directions in mass spectrometry. This year’s meeting will include an optional OpenMS tutorial session on the first day (Wednesday, September 21) with the general conference starting on Thursday, September 22. Traditionally, the schedule of our meetings is very flexible, allowing discussions and contributions from the participants. […]
We proudly present our new web page build with WordPress. The workflow tutorials have been updated for improved clarity.
We are proud to announce the next source-only OpenMS release (version 2.0.1) with over 300 additions and bug fixes. New tools are: IDScoreSwitcher — Switches between different scores of peptide or protein hits in identification data (UTIL) LuciphorAdapter — Modification site localisation using LuciPHOr2 (TOPP) MetaProSIP — Performs proteinSIP on peptide features for elemental flux analysis (UTIL) MzMLSplitter — [...]
Dear friends of OpenMS, we are happy to announce the 8th OpenMS User Meeting from September 16th-18th 2015 at the Medizinisches Proteom-Center in Bochum. During the meeting we will present the capabilities of OpenMS, and discuss your needs and future directions in mass spectrometry. This year’s meeting will include an optional OpenMS tutorial session on the [...]
