• M. Sturm and O. Kohlbacher, “TOPPView: an open-source viewer for mass spectrometry data,” Journal of proteome research, vol. 8, iss. 7, p. 3760–3763, 2009.
    [Bibtex] 
    @article{sturm2009toppview,
title={TOPPView: an open-source viewer for mass spectrometry data},
author={Sturm, Marc and Kohlbacher, Oliver},
journal={Journal of proteome research},
volume={8},
number={7},
pages={3760--3763},
year={2009},
publisher={ACS Publications}
}
  • C. Bielow, S. Aiche, S. Andreotti, A. Bertsch, C. Gröpl, R. Hussong, N. Pfeifer, M. Sturm, A. Zerck, A. Hildebrandt, and others, “OpenMS—An Open Source Framework for Mass Spec-trometry Data,” German Conference on Bioinformatics 2009, p. 154.
    [Bibtex] 
    @article{bielow2009openms,
title={OpenMS—An Open Source Framework for Mass Spec-trometry Data},
author={Bielow, Chris and Aiche, Stephan and Andreotti, Sandro and Bertsch, Andreas and Gr{\"o}pl, Clemens and Hussong, Rene and Pfeifer, Nico and Sturm, Marc and Zerck, Alexandra and Hildebrandt, Andreas and others},
journal={German Conference on Bioinformatics 2009},
pages={154}
}
  • A. Bertsch, A. Leinenbach, A. Pervukhin, M. Lubeck, R. Hartmer, C. Baessmann, Y. A. Elnakady, R. Müller, S. Böcker, C. G. Huber, and others, “De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation,” Electrophoresis, vol. 30, iss. 21, p. 3736–3747, 2009.
    [Bibtex] 
    @article{bertsch2009novo,
title={De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation},
author={Bertsch, Andreas and Leinenbach, Andreas and Pervukhin, Anton and Lubeck, Markus and Hartmer, Ralf and Baessmann, Carsten and Elnakady, Yasser Abbas and M{\"u}ller, Rolf and B{\"o}cker, Sebastian and Huber, Christian G and others},
journal={Electrophoresis},
volume={30},
number={21},
pages={3736--3747},
year={2009},
publisher={Wiley Online Library}
}
  • N. Pfeifer, A. Leinenbach, C. G. Huber, and O. Kohlbacher, “Improving peptide identification in proteome analysis by a two-dimensional retention time filtering approach,” Journal of proteome research, vol. 8, iss. 8, p. 4109–4115, 2009.
    [Bibtex] 
    @article{pfeifer2009improving,
title={Improving peptide identification in proteome analysis by a two-dimensional retention time filtering approach},
author={Pfeifer, Nico and Leinenbach, Andreas and Huber, Christian G and Kohlbacher, Oliver},
journal={Journal of proteome research},
volume={8},
number={8},
pages={4109--4115},
year={2009},
publisher={ACS Publications}
}
  • L. Nilse, M. Sturm, D. Trudgian, M. Salek, P. F. Sims, K. M. Carroll, and S. J. Hubbard, “SILACAnalyzer-a tool for differential quantitation of stable isotope derived data,” in Computational Intelligence Methods for Bioinformatics and Biostatistics, Springer Berlin Heidelberg, 2009, p. 45–55.
    [Bibtex] 
    @incollection{nilse2009silacanalyzer,
title={SILACAnalyzer-a tool for differential quantitation of stable isotope derived data},
author={Nilse, Lars and Sturm, Marc and Trudgian, David and Salek, Mogjiborahman and Sims, Paul FG and Carroll, Kathleen M and Hubbard, Simon J},
booktitle={Computational Intelligence Methods for Bioinformatics and Biostatistics},
pages={45--55},
year={2009},
publisher={Springer Berlin Heidelberg}
}
  • O. Kohlbacher and K. Reinert, “OpenMS and TOPP: Open source software for lc-ms data analysis,” Proteome Bioinformatics, vol. 604, iss. 2, 2009.
    [Bibtex] 
    @article{kohlbacher2009openms,
title={OpenMS and TOPP: Open source software for lc-ms data analysis},
author={Kohlbacher, O and Reinert, K},
journal={Proteome Bioinformatics},
volume={604},
number={2},
year={2009}
}