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    [Bibtex] 
    @article{vizcaino2017mzidentml,
title={The mzIdentML data standard version 1.2, supporting advances in proteome informatics},
author={Vizca{\'i}no, Juan Antonio and Mayer, Gerhard and Perkins, Simon R and Barsnes, Harald and Vaudel, Marc and Perez-Riverol, Yasset and Ternent, Tobias and Uszkoreit, Julian and Eisenacher, Martin and Fischer, Lutz and others},
journal={Molecular \& Cellular Proteomics},
pages={mcp--M117},
year={2017},
publisher={ASBMB}
}
  • E. Audain, J. Uszkoreit, T. Sachsenberg, J. Pfeuffer, X. Liang, H. Hermjakob, A. Sanchez, M. Eisenacher, K. Reinert, D. L. Tabb, and others, “In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics,” Journal of proteomics, vol. 150, p. 170–182, 2017.
    [Bibtex] 
    @article{audain2017depth,
title={In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics},
author={Audain, Enrique and Uszkoreit, Julian and Sachsenberg, Timo and Pfeuffer, Julianus and Liang, Xiao and Hermjakob, Henning and Sanchez, Aniel and Eisenacher, Martin and Reinert, Knut and Tabb, David L and others},
journal={Journal of proteomics},
volume={150},
pages={170--182},
year={2017},
publisher={Elsevier}
}
  • H. L. Röst, R. Aebersold, and O. T. Schubert, “Automated SWATH data analysis using targeted extraction of ion chromatograms,” Proteomics: Methods and Protocols, p. 289–307, 2017.
    [Bibtex] 
    @article{rost2017automated,
title={Automated SWATH data analysis using targeted extraction of ion chromatograms},
author={R{\"o}st, Hannes L and Aebersold, Ruedi and Schubert, Olga T},
journal={Proteomics: Methods and Protocols},
pages={289--307},
year={2017},
publisher={Springer New York}
}
  • F. da Veiga Leprevost, B. A. Grüning, S. Alves Aflitos, H. L. Röst, J. Uszkoreit, H. Barsnes, M. Vaudel, P. Moreno, L. Gatto, J. Weber, and others, “BioContainers: an open-source and community-driven framework for software standardization,” Bioinformatics, p. btx192, 2017.
    [Bibtex] 
    @article{da2017biocontainers,
title={BioContainers: an open-source and community-driven framework for software standardization},
author={da Veiga Leprevost, Felipe and Gr{\"u}ning, Bj{\"o}rn A and Alves Aflitos, Saulo and R{\"o}st, Hannes L and Uszkoreit, Julian and Barsnes, Harald and Vaudel, Marc and Moreno, Pablo and Gatto, Laurent and Weber, Jonas and others},
journal={Bioinformatics},
pages={btx192},
year={2017},
publisher={Oxford University Press}
}
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    [Bibtex] 
    @article{weisser2017targeted,
title={Targeted feature detection for data-dependent shotgun proteomics},
author={Weisser, Hendrik and Choudhary, Jyoti S},
journal={Journal of Proteome Research},
year={2017},
publisher={ACS Publications},
doi={10.1021/acs.jproteome.7b00248}
}
  • [DOI] J. Pfeuffer, T. Sachsenberg, O. Alka, M. Walzer, A. Fillbrunn, L. Nilse, O. Schilling, K. Reinert, and O. Kohlbacher, “OpenMS – A platform for reproducible analysis of mass spectrometry data,” Journal of Biotechnology, 2017.
    [Bibtex] 
    @article{pfeuffer2017denbi,
title = "OpenMS – A platform for reproducible analysis of mass spectrometry data",
journal = "Journal of Biotechnology",
volume = "",
number = "",
pages = "",
year = "2017",
note = "",
issn = "0168-1656",
doi = "10.1016/j.jbiotec.2017.05.016",
url = "http://www.sciencedirect.com/science/article/pii/S0168165617302511",
author = "Julianus Pfeuffer and Timo Sachsenberg and Oliver Alka and Mathias Walzer and Alexander Fillbrunn and Lars Nilse and Oliver Schilling and Knut Reinert and Oliver Kohlbacher"
}