• J. Pfeuffer, T. Sachsenberg, T. M. Dijkstra, O. Serang, K. Reinert, and O. Kohlbacher, “EPIFANY-A method for efficient high-confidence protein inference,” Journal of proteome research, p. 734327, 2019.
    [Bibtex]
    @article{pfeuffer2019epifany,
    title={EPIFANY-A method for efficient high-confidence protein inference},
    author={Pfeuffer, Julianus and Sachsenberg, Timo and Dijkstra, Tjeerd MH and Serang, Oliver and Reinert, Knut and Kohlbacher, Oliver},
    journal={Journal of proteome research},
    pages={734327},
    year={2019},
    publisher={Cold Spring Harbor Laboratory}
    }
  • N. Hulstaert, J. Shofstahl, T. Sachsenberg, M. Walzer, H. Barsnes, L. Martens, and Y. Perez-Riverol, “ThermoRawFileParser: Modular, Scalable, and Cross-Platform RAW File Conversion,” Journal of proteome research, vol. 19, iss. 1, p. 537–542, 2019.
    [Bibtex]
    @article{hulstaert2019thermorawfileparser,
    title={ThermoRawFileParser: Modular, Scalable, and Cross-Platform RAW File Conversion},
    author={Hulstaert, Niels and Shofstahl, Jim and Sachsenberg, Timo and Walzer, Mathias and Barsnes, Harald and Martens, Lennart and Perez-Riverol, Yasset},
    journal={Journal of proteome research},
    volume={19},
    number={1},
    pages={537--542},
    year={2019},
    publisher={ACS Publications}
    }
  • L. Bichmann, A. Nelde, M. Ghosh, L. Heumos, C. Mohr, A. Peltzer, L. Kuchenbecker, T. Sachsenberg, J. S. Walz, S. Stevanović, and others, “MHCquant: Automated and reproducible data analysis for immunopeptidomics,” Journal of proteome research, vol. 18, iss. 11, p. 3876–3884, 2019.
    [Bibtex]
    @article{bichmann2019mhcquant,
    title={MHCquant: Automated and reproducible data analysis for immunopeptidomics},
    author={Bichmann, Leon and Nelde, Annika and Ghosh, Michael and Heumos, Lukas and Mohr, Christopher and Peltzer, Alexander and Kuchenbecker, Leon and Sachsenberg, Timo and Walz, Juliane S and Stevanović, Stefan and others},
    journal={Journal of proteome research},
    volume={18},
    number={11},
    pages={3876--3884},
    year={2019},
    publisher={ACS Publications}
    }
  • M. W. Löffler, C. Mohr, L. Bichmann, L. K. Freudenmann, M. Walzer, C. M. Schroeder, N. Trautwein, F. J. Hilke, R. S. Zinser, L. Mühlenbruch, and others, “Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma,” Genome medicine, vol. 11, iss. 1, p. 28, 2019.
    [Bibtex]
    @article{loffler2019multi,
    title={Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma},
    author={L{\"o}ffler, Markus W and Mohr, Christopher and Bichmann, Leon and Freudenmann, Lena Katharina and Walzer, Mathias and Schroeder, Christopher M and Trautwein, Nico and Hilke, Franz J and Zinser, Raphael S and M{\"u}hlenbruch, Lena and others},
    journal={Genome medicine},
    volume={11},
    number={1},
    pages={28},
    year={2019},
    publisher={BioMed Central}
    }
  • A. Marcu, L. Bichmann, L. Kuchenbecker, L. Backert, D. J. Kowalewski, L. K. Freudenmann, M. W. Löffler, M. Lübke, J. S. Walz, J. Velz, and others, “The HLA Ligand Atlas. A resource of natural HLA ligands presented on benign tissues,” BioRxiv, p. 778944, 2019.
    [Bibtex]
    @article{marcu2019hla,
    title={The HLA Ligand Atlas. A resource of natural HLA ligands presented on benign tissues},
    author={Marcu, Ana and Bichmann, Leon and Kuchenbecker, Leon and Backert, Linus and Kowalewski, Daniel J and Freudenmann, Lena Katharina and L{\"o}ffler, Markus W and L{\"u}bke, Maren and Walz, Juliane S and Velz, Julia and others},
    journal={BioRxiv},
    pages={778944},
    year={2019},
    publisher={Cold Spring Harbor Laboratory}
    }