KNIME
Old (TOPPAS)
- Targeted feature detection for label-free quantification
- Parallel execution of OpenMS tools in KNIME
- DNA heteroconjugate detection (Flett et al.)
- Non-targeted LC-MS-based lipidomics
- Basic Peptide Identification
- Consensus Peptide Identification
- Peptide Identification and Label-free Quantification
- Protein Inference
- SWATH Analysis
- Small Molecule Identification and Quantification
This workflow shows both the use of standard ZipLoop nodes for iterative OpenMS tool execution, as well as how to execute OpenMS tools in parallel in a high-throughput manner (e.g., to use all computing power for a large number of files)!