KNIME
Old (TOPPAS)
- Targeted feature detection for label-free quantification
- Parallel execution of OpenMS tools in KNIME
- DNA heteroconjugate detection (Flett et al.)
- Non-targeted LC-MS-based lipidomics
- Basic Peptide Identification
- Consensus Peptide Identification
- Peptide Identification and Label-free Quantification
- Protein Inference
- SWATH Analysis
- Small Molecule Identification and Quantification
[1]
References:
[1] ![[doi]](https://www.openms.de/wp-content/plugins/papercite/img/external.png)
H. Weisser and J. S. Choudhary, “Targeted feature detection for data-dependent shotgun proteomics,” Journal of Proteome Research, 2017.
[Bibtex]
H. Weisser and J. S. Choudhary, “Targeted feature detection for data-dependent shotgun proteomics,” Journal of Proteome Research, 2017. [Bibtex]
@article{weisser2017targeted,
title={Targeted feature detection for data-dependent shotgun proteomics},
author={Weisser, Hendrik and Choudhary, Jyoti S},
journal={Journal of Proteome Research},
year={2017},
publisher={ACS Publications},
doi={10.1021/acs.jproteome.7b00248}
}